Jan 17, 2015 How To Install Run XQuartz X11 Applications On Mac OS X 10 10 Yosemite Or Later. Here is the link to download Xquartz (which is also X11): http://xquartz.macosforge. Preface This document provides additional details about installation that may help you solve certain difficulties, especially on Windows or Mac platforms. The source code for this vignette is available at. If you find something unclear or notice a typo, I would be very happy if you would click on the Pencil Icon on that page or follow and suggest an alternative wording. Don’t be shy about doing this; I have to review any change and even if your suggestion is not perfect it will still be a prompt for me to improve this document. Prerequisites nat is an R package and therefore runs on Mac/Linux/Windows. The only pre-requisite for most functionality is a recent version of R (>=3.1.0 recommended). • 3D visualisation is provided by the rgl package based on OpenGL. On Mac OS X if you use RStudio or R from the terminal, you must have a copy of XQuartz, the X11 window manager, installed. This is no longer a default install since Mac OS X 10.8. You need to install XQuartz, before installing the nat package. Logout and login for the installation to take effect. You can get it from. This page is also linked from the page. If you want to apply non-rigid registrations calculated by the Computational Morphometry Toolkit (CMTK) you will need to install that separately – see section External Dependencies below. External Dependencies nat is self sufficient for core functionality, but the transformation of 3D data using Computational Morphometry Toolkit (CMTK) registrations depends on an external installation of that toolkit. CMTK binaries can be downloaded for Windows, Linux and Mac at. Source code is available from the same site or an unofficial mirror repository at. We have extensive experience of using CMTK under Linux (where we compile from source) and Mac (where we compile or use the MacOSX-10.6-x86_64.dmg binary installers). We have also used to install as part of the Travis continuous integration setup (see the project’s file). CMTK+nat on Windows We have much less experience using CMTK on Windows than on Mac/Linux platforms. Experiments in May 2016 suggest that the best option is to use the cygwin CMTK distribution (cygwin provides a linux like environment). Here are the steps we took: • You must ensure that you have at least version. It is recommended that follow the steps for installing the development version of nat straight from github as described in section Development version • Install accepting the default path C: cygwin64 • When you run Cygwin’s setup.exe, you should also install all fftw3 packages. Shin sangoku musou 4 iso ps2 emuparadise. (fftw3 is a CMTK dependency which provides fast Fourier transform functions) • Download CMTK-3.3.1-CYGWIN-x86_64.tar.gz to the cygwin folder ( C: cygwin64) • Start a Cygwin terminal and issue the following command tar -xvf CMTK-3.3.1-CYGWIN-x86_64.tar.gz to extract CMTK to the cygwin folder. • Optionally add C: cygwin64 bin to your windows path (since v1.8.10 nat should look after this - see?cmtk.bindir). • The nat function cmtk.bindir() should now correctly identify the CMTK binary directory. You can test that the executables are working by trying the following in R library(nat);cmtk.dof2mat(version = TRUE) which should then respond with “3.3.1” if you have installed the CMTK version we have just mentioned. R is a programming language. To use R, we need to install an Integrated Development Environment (IDE). Rstudio is the Best IDE available as it is user-friendly, open-source and is part of the Anaconda platform. In this tutorial, we will learn • • • • • • • • • • • • • • Install Anaconda What is Anaconda?
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |